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Based on the auto-increment script by Eric Saindon, updated for maya3. Changed it so it pads in the format 'filename-nnn.mb', and makes sure it adds the .mb or .ma suffix only once, at the end. Hope you find it useful.
v1.2 has an important fix... the previous version would eat 'ma' or 'mb' from anywhere in the filename, not just the end. It wouldn't damage anything, just warn you that it couldn't save.